> For the complete documentation index, see [llms.txt](https://niagads.gitbook.io/vcpa/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://niagads.gitbook.io/vcpa/master.md).

# VCPA

The **VCPA** is SNP/Indel **V**ariant **C**alling **P**ipeline and data management tool used for analysis of whole genome and exome sequencing (WGS/WES) for the **A**lzheimer’s Disease Sequencing Project.