Step 6: Submit a job to process one whole genome (WGS) / whole exome (WES) sample

After setting up the tracking database, users are ready to process one WGS / WES sample. Please follow these steps below:

6.1 Update vcpa-pipeline bitbucket contents

6.2 Choose which workflow to use

6.3 Enter your AWS credentials into the workflow script

6.4 Launch Amazon EC2 Spot Instances via starcluster